Overview

File submission for CGAP

Description

This is a tool for uploading files to CGAP.

System Requirements

• Python 3.6
• Pip (Any should work)
• Virtualenv (>=15.0.0)

• Overview
• Installing SubmitCGAP
  • Setting Up a Virtual Environment (OPTIONAL)
    • Activating a Virtual Environment
    • Deactivating a Virtual Environment
  • Installing Poetry in a Virtual Environment
  • Setting Up Credentials
• Getting Started
  • Formatting Files for Submission
  • Metadata Bundles
    • Accessioning
    • Family History
  • Gene Lists
• submit_cgap package
  • Subpackages
    • submit_cgap.scripts package
      • Submodules
      • submit_cgap.scripts.make_sample_fastq_file module
      • submit_cgap.scripts.resume_uploads module
      • submit_cgap.scripts.submit_metadata_bundle module
      • submit_cgap.scripts.upload_item_data module
      • Module contents
    • submit_cgap.tests package
      • Submodules
      • submit_cgap.tests.test_auth module
      • submit_cgap.tests.test_base module
      • submit_cgap.tests.test_exceptions module
      • submit_cgap.tests.test_make_sample_fastq_file module
      • submit_cgap.tests.test_resume_uploads module
      • submit_cgap.tests.test_submission module
      • submit_cgap.tests.test_submit_metadata_bundle module
      • submit_cgap.tests.test_upload_item_data module
      • submit_cgap.tests.test_utils module
      • Module contents
  • Submodules
  • submit_cgap.auth module
  • submit_cgap.base module
  • submit_cgap.exceptions module
  • submit_cgap.submission module
  • submit_cgap.utils module
  • Module contents