Overview¶
SubmitCGAP: remote file submitter for CGAP¶
Description¶
This is a tool for uploading files to CGAP.
System Requirements¶
- Python 3.7, 3.8 or 3.9
- Pip (>=20.0.0)
- Virtualenv (>=16.0.0)
What To Do Next¶
Advanced users who have already installed Python can proceed to instructions for Installing SubmitCGAP.
Less experienced users should start with instructions for Installing Prerequisites, which will introduce some basics for working with the terminal and installing the dependencies to run this package.
Although at some point SubmitCGAPr might offer the ability to use rclone invisibly, for now it uses awscli only. But we do now experimentally offer some instructions for Using rclone instead at the end of this documentation in case that’s an option you want to pursue.
- Overview
- Installing Prerequisites
- Installing SubmitCGAP
- Using SubmitCGAP
- Implementation of submit_cgap
- submit_cgap package
- submit_cgap.base module
- submit_cgap.exceptions module
- submit_cgap.submission module
- submit_cgap.utils module
- submit_cgap subpackages
- submit_cgap.scripts package
- submit_cgap.tests package
- submit_cgap.tests.test_base module
- submit_cgap.tests.test_exceptions module
- submit_cgap.tests.test_make_sample_fastq_file module
- submit_cgap.tests.test_resume_uploads module
- submit_cgap.tests.test_submission module
- submit_cgap.tests.test_submit_metadata_bundle module
- submit_cgap.tests.test_upload_item_data module
- submit_cgap.tests.test_utils module
- Using rclone instead (experimental)